Variant report

Variant	rs3806816
Chromosome Location	chr4:10119170-10119171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:202)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:202 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr4:10118608-10119947	HepG2	liver:	n/a	n/a
2	JUND	chr4:10118295-10119869	K562	blood:	n/a	chr4:10119554-10119563 chr4:10119145-10119154
3	E2F4	chr4:10118274-10119337	MCF10A-Er-Src	breast:	n/a	chr4:10119212-10119224
4	MAX	chr4:10118210-10119519	GM12878	blood:	n/a	chr4:10119115-10119124
5	MAX	chr4:10118098-10119234	A549	lung:	n/a	chr4:10119115-10119124
6	POLR2A	chr4:10117184-10119768	GM12878	blood:	n/a	n/a
7	CHD1	chr4:10117557-10119893	H1-hESC	embryonic stem cell:	n/a	chr4:10118642-10118652 chr4:10118518-10118528
8	TAF7	chr4:10117413-10119643	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr4:10107812-10120993	GM18505	blood:	n/a	n/a
10	FOXM1	chr4:10118166-10119781	GM12878	blood:	n/a	n/a
11	ATF2	chr4:10118991-10119493	GM12878	blood:	n/a	n/a
12	POLR2A	chr4:10117435-10120202	MCF10A-Er-Src	breast:	n/a	n/a
13	SMARCB1	chr4:10117308-10119876	Hela-S3	cervix:	n/a	n/a
14	MYC	chr4:10117407-10119673	K562	blood:	n/a	chr4:10119115-10119124
15	POLR2A	chr4:10116537-10120533	GM12892	blood:	n/a	n/a
16	MXI1	chr4:10116874-10119711	SK-N-SH	brain:	n/a	n/a
17	NFIC	chr4:10118610-10119817	GM12878	blood:	n/a	n/a
18	JUN	chr4:10117961-10119359	K562	blood:	n/a	chr4:10119145-10119154
19	POLR2A	chr4:10117610-10119390	HEK293	kidney:	n/a	n/a
20	POLR2A	chr4:10118602-10120400	GM12891	blood:	n/a	n/a
21	POLR2A	chr4:10116933-10119534	HepG2	liver:	n/a	n/a
22	CHD1	chr4:10118257-10119304	GM12878	blood:	n/a	chr4:10118642-10118652 chr4:10118518-10118528
23	TBL1XR1	chr4:10118384-10119633	K562	blood:	n/a	n/a
24	STAT5A	chr4:10118617-10119313	GM12878	blood:	n/a	n/a
25	IRF1	chr4:10118271-10119395	K562	blood:	n/a	chr4:10118640-10118654
26	MYC	chr4:10117241-10119787	NB4	blood:	n/a	chr4:10119115-10119124
27	POLR2A	chr4:10117291-10120420	GM18526	blood:	n/a	n/a
28	CEBPB	chr4:10118863-10119252	K562	blood:	n/a	n/a
29	POLR2A	chr4:10116559-10120411	HUVEC	blood vessel:	n/a	n/a
30	POLR2A	chr4:10108957-10121214	K562	blood:	n/a	n/a
31	UBTF	chr4:10117169-10119384	K562	blood:	n/a	n/a
32	POLR2A	chr4:10118609-10120395	GM12891	blood:	n/a	n/a
33	KAT2A	chr4:10118738-10119176	Hela-S3	cervix:	n/a	n/a
34	RELA	chr4:10118279-10120248	GM19193	blood:	n/a	n/a
35	MAFK	chr4:10118204-10119293	GM12878	blood:	n/a	n/a
36	SIN3AK20	chr4:10119150-10119587	K562	blood:	n/a	n/a
37	HCFC1	chr4:10118001-10119206	K562	blood:	n/a	n/a
38	POLR2A	chr4:10118206-10119842	PFSK-1	brain:	n/a	n/a
39	POU2F2	chr4:10118094-10120533	GM12878	blood:	n/a	chr4:10119530-10119542
40	TAF7	chr4:10118620-10119610	K562	blood:	n/a	n/a
41	ELF1	chr4:10117348-10119833	GM12878	blood:	n/a	chr4:10118496-10118505 chr4:10118494-10118505 chr4:10118649-10118658 chr4:10118494-10118505 chr4:10118648-10118659 chr4:10118495-10118504
42	TBP	chr4:10118195-10120149	K562	blood:	n/a	n/a
43	ZMIZ1	chr4:10118243-10120488	K562	blood:	n/a	n/a
44	POLR2A	chr4:10115978-10120867	GM19193	blood:	n/a	n/a
45	NRF1	chr4:10118058-10119318	SK-N-SH	brain:	n/a	chr4:10118580-10118594
46	POLR2A	chr4:10118148-10119755	U87	brain:	n/a	n/a
47	POLR2A	chr4:10118222-10119479	HepG2	liver:	n/a	n/a
48	POLR2A	chr4:10119138-10119453	SK-N-SH	brain:	n/a	n/a
49	JUND	chr4:10118010-10119245	H1-hESC	embryonic stem cell:	n/a	chr4:10119145-10119154
50	POLR2A	chr4:10117189-10119472	MCF-7	breast:	n/a	n/a

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10114078..10122203-chr4:10455501..10461954,12	K562	blood:
2	chr4:10079908..10083086-chr4:10118111..10120743,3	MCF-7	breast:
3	chr11:130182992..130183574-chr4:10118623..10119357,2	MCF-7	breast:
4	chr4:10118945..10120597-chr4:10522587..10525551,2	K562	blood:
5	chr4:10118970..10119677-chr7:38276136..38276938,2	NB4	blood:
6	chr4:10117885..10120046-chr4:15002077..15005679,3	K562	blood:
7	chr4:10119097..10123564-chr4:10520690..10524781,5	K562	blood:
8	chr19:10224335..10225204-chr4:10118675..10119254,2	NB4	blood:
9	chr4:10118096..10120134-chr4:120132938..120134985,2	MCF-7	breast:
10	chr4:10118162..10120785-chr4:10200742..10203933,4	K562	blood:
11	chr4:10094579..10097244-chr4:10117506..10119251,2	MCF-7	breast:
12	chr4:10117355..10119664-chr4:10257217..10260454,4	K562	blood:
13	chr1:174968127..174968990-chr4:10118350..10119217,2	Hela-S3	cervix:
14	chr4:10118696..10122262-chr4:10407294..10411909,5	K562	blood:
15	chr4:10118457..10122021-chr9:33165887..33167387,4	K562	blood:
16	chr4:10117400..10119957-chr9:33165887..33167387,2	K562	blood:
17	chr4:10117259..10123841-chr4:10401893..10417202,19	K562	blood:
18	chr17:47269694..47270307-chr4:10118653..10119466,2	Hela-S3	cervix:
19	chr4:10118874..10119431-chr6:10415201..10416039,2	Hela-S3	cervix:
20	chr4:10041255..10044577-chr4:10118999..10121902,3	K562	blood:
21	chr4:10118335..10120046-chr4:15002866..15005679,2	K562	blood:
22	chr4:10117656..10120785-chr4:10200069..10203011,5	K562	blood:
23	chr4:10117842..10119536-chr4:10257217..10259311,2	K562	blood:
24	chr4:10091716..10096918-chr4:10117039..10120240,5	MCF-7	breast:
25	chr4:10119129..10122077-chr4:10500850..10502742,2	K562	blood:
26	chr2:95787195..95787845-chr4:10118352..10119171,2	HCT-116	colon:
27	chr4:10117460..10124392-chr4:10456675..10465032,17	K562	blood:
28	chr4:10118597..10121491-chr4:10308024..10311461,4	K562	blood:
29	chr4:10109894..10126876-chr4:10164648..10190106,79	K562	blood:
30	chr15:65596761..65597431-chr4:10118051..10119234,3	NB4	blood:
31	chr4:10117300..10124855-chr4:10138380..10145377,13	MCF-7	breast:
32	chr4:10116325..10123199-chr4:10169149..10177855,21	K562	blood:
33	chr4:10117020..10119192-chr4:10169153..10171156,2	MCF-7	breast:
34	chr4:10097932..10101732-chr4:10116626..10120469,5	MCF-7	breast:

No data

Variant related genes	Relation type
RNA5SP155	TF binding region
WDR1	TF binding region
ENSG00000116161	Chromatin interaction
ENSG00000178163	Chromatin interaction
ENSG00000137203	Chromatin interaction
ENSG00000178636	Chromatin interaction
ENSG00000247624	Chromatin interaction
ENSG00000109667	Chromatin interaction
ENSG00000144029	Chromatin interaction
ENSG00000233554	Chromatin interaction
ENSG00000250393	Chromatin interaction
ENSG00000264931	Chromatin interaction
ENSG00000248777	Chromatin interaction
ENSG00000250613	Chromatin interaction
ENSG00000071127	Chromatin interaction
ENSG00000251296	Chromatin interaction
ENSG00000250040	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000137449	Chromatin interaction
ENSG00000145390	Chromatin interaction
ENSG00000086062	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10939708	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11727818	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11732818	0.89[ASN][1000 genomes]
rs12499240	0.89[ASN][1000 genomes]
rs12502958	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640611	0.89[ASN][1000 genomes]
rs12640847	0.86[ASN][1000 genomes]
rs13130003	0.89[ASN][1000 genomes]
rs13441	0.89[ASN][1000 genomes]
rs2241469	0.86[ASN][1000 genomes]
rs2241482	0.89[ASN][1000 genomes]
rs2241484	0.89[ASN][1000 genomes]
rs2241485	0.86[ASN][1000 genomes]
rs35276762	0.81[ASN][1000 genomes]
rs35995899	0.83[ASN][1000 genomes]
rs3756220	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3756222	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756226	0.87[ASN][1000 genomes]
rs3775935	0.85[ASN][1000 genomes]
rs3775938	0.84[ASN][1000 genomes]
rs3796821	0.86[ASN][1000 genomes]
rs3796822	0.87[ASN][1000 genomes]
rs3796823	0.87[ASN][1000 genomes]
rs3822237	0.89[ASN][1000 genomes]
rs3822239	0.88[ASN][1000 genomes]
rs3822245	0.87[ASN][1000 genomes]
rs3822259	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4263403	0.89[ASN][1000 genomes]
rs4311315	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4337733	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4533774	0.83[ASN][1000 genomes]
rs4697706	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4697917	0.89[ASN][1000 genomes]
rs4697921	0.89[ASN][1000 genomes]
rs4697922	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62288544	0.88[ASN][1000 genomes]
rs6820009	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs717614	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
5	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
7	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
15	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
16	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
18	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
19	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
20	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
21	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
22	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
24	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
25	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
26	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
27	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
28	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
29	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
30	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
31	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
32	nsv537031	chr4:10040713-10262258	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
34	nsv428438	chr4:10058226-10273779	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
35	nsv537032	chr4:10069805-10262258	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
36	nsv537033	chr4:10069805-10297561	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
37	nsv524687	chr4:10080462-10159103	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
38	nsv1003286	chr4:10082156-10230606	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
39	esv16807	chr4:10099819-10234566	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
40	nsv537034	chr4:10103058-10262258	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
41	nsv537035	chr4:10103058-10297561	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
42	esv3354977	chr4:10117079-10119627	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	35 gene(s)	inside rSNPs	diseases
43	esv3526537	chr4:10117204-10120252	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
44	esv3526538	chr4:10117204-10120252	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
45	nsv10451	chr4:10118704-10120232	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10116800-10119200	Active TSS	Aorta	Aorta
2	chr4:10117000-10119200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:10117000-10119200	Active TSS	Right Atrium	heart
4	chr4:10117000-10119200	Active TSS	Small Intestine	intestine
5	chr4:10117000-10119400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr4:10117200-10119200	Active TSS	Ovary	ovary
7	chr4:10117200-10119200	Active TSS	A549	lung
8	chr4:10117200-10119800	Active TSS	H9 Cell Line	embryonic stem cell
9	chr4:10117400-10119200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:10117400-10119200	Active TSS	Colonic Mucosa	Colon
11	chr4:10117400-10119200	Active TSS	Esophagus	oesophagus
12	chr4:10117400-10119200	Active TSS	Gastric	stomach
13	chr4:10117400-10119200	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr4:10117400-10119400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:10117400-10119400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:10117400-10119400	Active TSS	Fetal Kidney	kidney
17	chr4:10117400-10120000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:10117600-10119200	Active TSS	H1 Cell Line	embryonic stem cell
19	chr4:10117600-10119200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:10117600-10119200	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr4:10117600-10119200	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr4:10117600-10119200	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr4:10117600-10119200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:10117600-10119200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:10117600-10119200	Active TSS	Brain Substantia Nigra	brain
26	chr4:10117600-10119200	Active TSS	Right Ventricle	heart
27	chr4:10117600-10119400	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr4:10117600-10119400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr4:10117600-10119400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:10117600-10119400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:10117600-10119400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr4:10117600-10119600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr4:10117600-10119600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:10117600-10119600	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr4:10117600-10119800	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr4:10117600-10119800	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr4:10117800-10119200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:10117800-10119200	Active TSS	Fetal Muscle Trunk	muscle
39	chr4:10117800-10119200	Active TSS	K562	blood
40	chr4:10117800-10119200	Active TSS	Monocytes-CD14+_RO01746	blood
41	chr4:10117800-10119400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr4:10117800-10119400	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr4:10118000-10119200	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr4:10118000-10120000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:10118800-10119400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:10118800-10119400	Flanking Active TSS	Placenta	Placenta
47	chr4:10118800-10119400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr4:10118800-10119400	Flanking Active TSS	HMEC	breast
49	chr4:10118800-10119400	Flanking Active TSS	NHLF	lung
50	chr4:10118800-10119600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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