Variant report

Variant	rs10942722
Chromosome Location	chr5:74184144-74184145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10942721	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942723	0.85[ASN][1000 genomes]
rs11739370	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11740894	0.85[ASN][1000 genomes]
rs11745011	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11745016	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11745686	0.84[ASN][1000 genomes]
rs11746386	0.83[ASN][1000 genomes]
rs12519932	0.83[ASN][1000 genomes]
rs1455786	0.85[ASN][1000 genomes]
rs55979253	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56831970	0.85[ASN][1000 genomes]
rs58925145	0.85[ASN][1000 genomes]
rs62367818	0.86[ASN][1000 genomes]
rs6894292	0.83[ASN][1000 genomes]
rs7700681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7719022	0.86[ASN][1000 genomes]
rs7722489	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv965527	chr5:74181141-74195624	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10942722	NSA2	cis	parietal	SCAN
rs10942722	NSA2	cis	cerebellum	SCAN
rs10942722	GFM2	cis	parietal	SCAN
rs10942722	AGGF1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74180000-74185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:74180000-74185200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:74180000-74185200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:74180200-74185200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:74183400-74185800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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