Variant report

Variant	rs1455786
Chromosome Location	chr5:74191807-74191808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10942721	0.85[ASN][1000 genomes]
rs10942722	0.85[ASN][1000 genomes]
rs10942723	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11739370	0.82[CHB][hapmap]
rs11740894	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11745011	0.90[ASN][1000 genomes]
rs11745016	0.90[ASN][1000 genomes]
rs11745686	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11746386	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12519932	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55979253	0.90[ASN][1000 genomes]
rs56831970	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58925145	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62367818	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62367823	0.91[AFR][1000 genomes]
rs6453091	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6894292	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7700681	0.89[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs7719022	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7721009	0.80[EUR][1000 genomes]
rs7722489	0.81[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv965527	chr5:74181141-74195624	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74191200-74193000	Enhancers	Fetal Brain Female	brain
2	chr5:74191400-74192200	Enhancers	Fetal Lung	lung
3	chr5:74191400-74192400	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:74191400-74192400	Enhancers	Fetal Heart	heart
5	chr5:74191600-74192200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:74191600-74192200	Enhancers	Stomach Smooth Muscle	stomach
7	chr5:74191600-74192400	Enhancers	Liver	Liver
8	chr5:74191600-74192400	Enhancers	Brain Angular Gyrus	brain
9	chr5:74191600-74192400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:74191600-74192400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:74191600-74192400	Enhancers	Fetal Brain Male	brain
12	chr5:74191800-74192000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:74191800-74192000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:74191800-74192200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:74191800-74192200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:74191800-74192200	Enhancers	Aorta	Aorta
17	chr5:74191800-74192200	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr5:74191800-74192200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr5:74191800-74192200	Enhancers	Ovary	ovary
20	chr5:74191800-74192200	Enhancers	Pancreas	Pancrea
21	chr5:74191800-74192200	Enhancers	NHEK	skin
22	chr5:74191800-74192400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr5:74191800-74192400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:74191800-74192400	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr5:74191800-74192400	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr5:74191800-74192400	Enhancers	Osteobl	bone
27	chr5:74191800-74193000	Enhancers	Cortex derived primary cultured neurospheres	brain

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