Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10942723	0.95[AFR][1000 genomes]
rs11738903	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11739301	0.87[ASN][1000 genomes]
rs11740706	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11740809	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11740894	0.86[AFR][1000 genomes]
rs11745686	0.95[AFR][1000 genomes]
rs11746386	0.95[AFR][1000 genomes]
rs11746561	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1455786	0.91[AFR][1000 genomes]
rs56831970	0.97[AFR][1000 genomes]
rs58010984	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58925145	0.86[AFR][1000 genomes]
rs60270014	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60430653	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62367768	0.87[ASN][1000 genomes]
rs62367770	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62367771	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62367773	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62367774	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62367818	0.80[AFR][1000 genomes]
rs62367819	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62367824	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367825	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367828	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68151843	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7711625	0.91[EUR][1000 genomes]
rs9686818	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv965527	chr5:74181141-74195624	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74192000-74199000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:74193200-74197000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:74193400-74193800	Active TSS	K562	blood

Quick Search: