Variant report

Variant	rs60270014
Chromosome Location	chr5:74173293-74173294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74161003..74163055-chr5:74170808..74173347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198780	Chromatin interaction
ENSG00000271714	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11738903	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739301	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740706	0.86[EUR][1000 genomes]
rs11740809	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746561	0.86[EUR][1000 genomes]
rs58010984	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60430653	0.87[EUR][1000 genomes]
rs62367768	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367771	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62367773	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62367774	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62367819	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62367823	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62367824	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62367825	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62367828	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68151843	0.86[EUR][1000 genomes]
rs7711625	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74171800-74174800	Enhancers	Liver	Liver
2	chr5:74172000-74173800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:74172200-74173800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:74172200-74174000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:74172400-74173400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:74172400-74173400	Weak transcription	Brain Substantia Nigra	brain
7	chr5:74172400-74173800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:74172400-74173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:74172400-74174000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:74172600-74173600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:74172600-74173600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:74172600-74173600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:74172600-74173600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:74172600-74173600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:74172600-74173600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:74172600-74173600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:74172600-74179200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:74173000-74173600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:74173000-74173800	Enhancers	Brain Germinal Matrix	brain
20	chr5:74173000-74174000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:74173000-74174400	Flanking Active TSS	HepG2	liver
22	chr5:74173200-74174000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr5:74173200-74174400	Weak transcription	Brain Anterior Caudate	brain
24	chr5:74173200-74174600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:74173200-74174800	Enhancers	Brain Hippocampus Middle	brain

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