Variant report

Variant	rs11746561
Chromosome Location	chr5:74212928-74212929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10075965	0.82[YRI][hapmap]
rs11738903	0.92[EUR][1000 genomes]
rs11739301	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.92[JPT][hapmap]
rs11740706	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740809	0.86[EUR][1000 genomes]
rs58010984	0.95[EUR][1000 genomes]
rs60270014	0.86[EUR][1000 genomes]
rs60430653	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367770	0.86[EUR][1000 genomes]
rs62367771	0.94[EUR][1000 genomes]
rs62367773	0.94[EUR][1000 genomes]
rs62367774	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62367819	0.92[EUR][1000 genomes]
rs62367823	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62367824	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62367825	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62367828	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68151843	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711625	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74210200-74214000	Enhancers	Stomach Mucosa	stomach
2	chr5:74210400-74213800	Enhancers	HepG2	liver
3	chr5:74211200-74213800	Enhancers	Liver	Liver
4	chr5:74212000-74213600	Enhancers	Hela-S3	cervix
5	chr5:74212400-74213200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:74212400-74213200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr5:74212400-74213200	Flanking Active TSS	A549	lung
8	chr5:74212400-74213200	Enhancers	HUVEC	blood vessel
9	chr5:74212400-74213400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:74212600-74213200	Enhancers	HMEC	breast
11	chr5:74212600-74213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:74212600-74213600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:74212800-74213000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:74212800-74213200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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