Variant report

Variant	rs7700681
Chromosome Location	chr5:74214805-74214806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10942721	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10942722	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10942723	0.83[ASN][1000 genomes]
rs11739370	0.88[JPT][hapmap]
rs11740894	0.83[ASN][1000 genomes]
rs11745011	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11745016	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11745686	0.86[ASN][1000 genomes]
rs11746386	0.84[ASN][1000 genomes]
rs12519932	0.85[ASN][1000 genomes]
rs1455786	0.82[ASN][1000 genomes]
rs55979253	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56831970	0.83[ASN][1000 genomes]
rs58925145	0.83[ASN][1000 genomes]
rs6453091	0.86[ASN][1000 genomes]
rs6894292	0.85[ASN][1000 genomes]
rs7722489	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74213200-74221400	Weak transcription	Pancreas	Pancrea
2	chr5:74213400-74217800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:74214000-74221400	Weak transcription	Stomach Mucosa	stomach
4	chr5:74214200-74215000	Flanking Active TSS	Liver	Liver
5	chr5:74214400-74215200	Weak transcription	Fetal Intestine Small	intestine
6	chr5:74214800-74215400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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