Variant report

Variant	rs55979253
Chromosome Location	chr5:74186564-74186565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10942721	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10942722	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10942723	0.91[ASN][1000 genomes]
rs11740894	0.91[ASN][1000 genomes]
rs11745011	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745016	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745686	0.88[ASN][1000 genomes]
rs11746386	0.86[ASN][1000 genomes]
rs12519932	0.88[ASN][1000 genomes]
rs1455786	0.90[ASN][1000 genomes]
rs56831970	0.91[ASN][1000 genomes]
rs58925145	0.91[ASN][1000 genomes]
rs62367818	0.82[ASN][1000 genomes]
rs6453091	0.80[ASN][1000 genomes]
rs6894292	0.88[ASN][1000 genomes]
rs7700681	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7719022	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv965527	chr5:74181141-74195624	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74184600-74186800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr5:74186200-74186600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:74186200-74186600	Enhancers	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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