Variant report

Variant	rs10943065
Chromosome Location	chr6:73523566-73523567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73521424..73523959-chr6:73529159..73530679,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10943066	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213639	0.90[JPT][hapmap]
rs17742423	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582343	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582344	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615346	0.81[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7770272	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:73519200-73524200	Enhancers	Fetal Heart	heart
5	chr6:73522200-73523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:73522200-73524600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:73522400-73523600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:73522400-73526200	Weak transcription	Osteobl	bone
9	chr6:73522600-73523600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:73522600-73523600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:73522600-73523800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:73522600-73529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:73522600-73530600	Weak transcription	HSMM	muscle
14	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
16	chr6:73522800-73526600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:73523200-73523800	Enhancers	Psoas Muscle	Psoas
18	chr6:73523200-73523800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:73523200-73526000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:73523400-73523600	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links