Variant report

Variant	rs4615346
Chromosome Location	chr6:73529940-73529941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73521424..73523959-chr6:73529159..73530679,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10943065	0.81[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs10943066	0.88[ASN][1000 genomes]
rs12213639	0.82[CHD][hapmap]
rs17742423	0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[ASN][1000 genomes]
rs4582343	0.88[ASN][1000 genomes]
rs4582344	0.83[CHB][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73522600-73530600	Weak transcription	HSMM	muscle
3	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
5	chr6:73524200-73530000	Weak transcription	Fetal Heart	heart
6	chr6:73527200-73531400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:73527400-73530400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:73529200-73530000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:73529200-73530200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:73529200-73530600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:73529200-73530800	Enhancers	Primary T cells from cord blood	blood
12	chr6:73529200-73530800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:73529200-73530800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:73529200-73531000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:73529200-73531000	Enhancers	HMEC	breast
16	chr6:73529200-73531000	Enhancers	NHEK	skin
17	chr6:73529200-73531200	Enhancers	Dnd41	blood
18	chr6:73529200-73532400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:73529400-73530000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:73529400-73530000	Enhancers	Thymus	Thymus
21	chr6:73529400-73530000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:73529400-73530200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:73529400-73530600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:73529400-73530600	Enhancers	Fetal Thymus	thymus
25	chr6:73529400-73530800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:73529400-73531000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:73529400-73531200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:73529600-73531000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:73529600-73532200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:73529600-73532800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:73529800-73531600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:73529800-73531800	Enhancers	Psoas Muscle	Psoas
33	chr6:73529800-73532800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:73529800-73532800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:73529800-73533600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:73529800-73534800	Weak transcription	Primary monocytes fromperipheralblood	blood

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