Variant report

Variant	rs4582344
Chromosome Location	chr6:73528389-73528390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10943065	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213639	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs17742423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582343	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615346	0.83[CHB][hapmap];0.88[ASN][1000 genomes]
rs9442857	1.00[YRI][hapmap]
rs9446766	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:73522600-73529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73522600-73530600	Weak transcription	HSMM	muscle
5	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
7	chr6:73524000-73528600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73524200-73529200	Weak transcription	Dnd41	blood
9	chr6:73524200-73530000	Weak transcription	Fetal Heart	heart
10	chr6:73524400-73529200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:73524600-73529200	Weak transcription	Primary T cells from cord blood	blood
12	chr6:73524600-73529200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:73524800-73529200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:73525000-73529400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:73526000-73528600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:73527200-73531400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:73527400-73530400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:73527800-73529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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