Variant report

Variant	rs12213639
Chromosome Location	chr6:73480021-73480022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10943065	0.90[JPT][hapmap]
rs10943066	0.89[CHB][hapmap]
rs17742423	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs4582344	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4615346	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas
3	chr6:73478600-73482400	Enhancers	Fetal Heart	heart
4	chr6:73479000-73480800	Enhancers	Primary B cells from cord blood	blood
5	chr6:73479200-73480200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:73479200-73481400	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:73479600-73487200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
9	chr6:73480000-73481200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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