Variant report

Variant	rs10943066
Chromosome Location	chr6:73524496-73524497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10943065	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213639	0.89[CHB][hapmap]
rs17742423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582343	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615346	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73515600-73529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:73522200-73524600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:73522400-73526200	Weak transcription	Osteobl	bone
5	chr6:73522600-73529400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73522600-73530600	Weak transcription	HSMM	muscle
7	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
9	chr6:73522800-73526600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:73523200-73526000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:73523600-73524600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:73523600-73524800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:73523800-73524600	Enhancers	Primary T cells from cord blood	blood
14	chr6:73524000-73526400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:73524000-73528600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:73524200-73525000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:73524200-73525800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:73524200-73529200	Weak transcription	Dnd41	blood
19	chr6:73524200-73530000	Weak transcription	Fetal Heart	heart
20	chr6:73524400-73529200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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