Variant report

Variant	rs10947072
Chromosome Location	chr6:30372278-30372279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12192526	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12203825	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205877	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205979	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12210448	0.85[EUR][1000 genomes]
rs13213174	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362116	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419689	0.86[ASN][1000 genomes]
rs17188729	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17188743	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17195068	0.87[EUR][1000 genomes]
rs17195089	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17410877	0.83[EUR][1000 genomes]
rs2021076	0.86[ASN][1000 genomes]
rs2023458	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074502	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2894163	0.86[ASN][1000 genomes]
rs34111681	0.81[EUR][1000 genomes]
rs34337286	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35118048	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35764894	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713325	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4713326	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4713328	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7741364	0.86[ASN][1000 genomes]
rs7751647	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261752	0.86[ASN][1000 genomes]
rs9261763	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10947072	HLA-DRB5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30372000-30373000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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