Variant report

Variant	rs12205877
Chromosome Location	chr6:30366143-30366144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30364759..30366950-chr6:30511934..30514120,2	K562	blood:
2	chr6:30311806..30314300-chr6:30365522..30367404,2	MCF-7	breast:
3	chr6:30365835..30367993-chr6:30369387..30370931,2	K562	blood:

Variant related genes	Relation type
ENSG00000241370	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1076832	0.82[EUR][1000 genomes]
rs10947072	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12192526	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12203825	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210448	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13213174	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1362116	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17188729	0.85[EUR][1000 genomes]
rs17188743	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17195068	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17195089	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17410877	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2023458	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2074502	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34111681	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34124993	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34337286	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35102994	0.82[EUR][1000 genomes]
rs35118048	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35764894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711217	0.87[EUR][1000 genomes]
rs4713325	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4713326	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4713328	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7751647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv969293	chr6:30348821-30368580	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv526251	chr6:30366100-30368012	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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