Variant report

Variant	rs17410877
Chromosome Location	chr6:30409156-30409157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1076832	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10947072	0.83[EUR][1000 genomes]
rs12192526	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12203825	0.85[EUR][1000 genomes]
rs12205877	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12205979	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12210448	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214298	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12214645	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13213174	0.83[EUR][1000 genomes]
rs1362116	0.83[EUR][1000 genomes]
rs17188729	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17188743	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17195068	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17195089	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2023458	0.85[EUR][1000 genomes]
rs2074502	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2157605	0.88[AMR][1000 genomes]
rs34039931	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34111681	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34124993	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34337286	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34521355	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35102994	0.82[EUR][1000 genomes]
rs35118048	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35764894	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4711217	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4713325	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713326	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713328	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6930977	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6941668	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7751647	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
5	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
6	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30408800-30409200	Enhancers	HMEC	breast

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