Variant report

Variant	rs2023458
Chromosome Location	chr6:30374519-30374520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10947072	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12192526	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12203825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12205877	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205979	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12210448	0.86[EUR][1000 genomes]
rs13213174	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362116	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419689	0.85[ASN][1000 genomes]
rs17188729	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17188743	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17195068	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17195089	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17410877	0.85[EUR][1000 genomes]
rs2021076	0.84[ASN][1000 genomes]
rs2074502	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2894163	0.84[ASN][1000 genomes]
rs34111681	0.83[EUR][1000 genomes]
rs34124993	0.80[EUR][1000 genomes]
rs34337286	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35118048	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35764894	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713325	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713326	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713328	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7741364	0.84[ASN][1000 genomes]
rs7751647	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9261752	0.84[ASN][1000 genomes]
rs9261763	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30374200-30374600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr6:30374200-30374800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:30374200-30374800	Bivalent Enhancer	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links