Variant report

Variant	rs12210448
Chromosome Location	chr6:30386236-30386237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30384989..30387983-chr6:30390745..30393003,2	K562	blood:
2	chr6:30386050..30388643-chr6:30391720..30393576,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1076832	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10947072	0.85[EUR][1000 genomes]
rs12192526	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12203825	0.86[EUR][1000 genomes]
rs12205877	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12205979	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12214298	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12214645	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13213174	0.85[EUR][1000 genomes]
rs1362116	0.85[EUR][1000 genomes]
rs17188729	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17188743	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17195068	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17195089	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17410877	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2023458	0.86[EUR][1000 genomes]
rs2074502	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2157605	0.85[AMR][1000 genomes]
rs34039931	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34111681	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34124993	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34337286	0.92[EUR][1000 genomes]
rs34521355	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35102994	0.83[EUR][1000 genomes]
rs35118048	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35764894	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4711217	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713325	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4713326	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4713328	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6930977	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6941668	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7751647	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv884064	chr6:30375290-30396173	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
7	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
8	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30386000-30386600	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links