Variant report

Variant	rs10947590
Chromosome Location	chr6:11835876-11835877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11834799..11837724-chr6:11847345..11849609,2	K562	blood:
2	chr6:11778590..11780846-chr6:11834155..11835984,2	K562	blood:
3	chr6:11834747..11836299-chr6:11847370..11849609,2	K562	blood:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10807158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569952	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711438	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711449	1.00[ASN][1000 genomes]
rs4713934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713965	1.00[ASN][1000 genomes]
rs4713980	1.00[ASN][1000 genomes]
rs6457899	1.00[ASN][1000 genomes]
rs6457906	1.00[ASN][1000 genomes]
rs6457908	1.00[ASN][1000 genomes]
rs6905247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920198	1.00[ASN][1000 genomes]
rs6927368	0.81[AMR][1000 genomes]
rs761372	1.00[ASN][1000 genomes]
rs761373	1.00[ASN][1000 genomes]
rs7739740	1.00[ASN][1000 genomes]
rs7746013	1.00[ASN][1000 genomes]
rs7758167	1.00[ASN][1000 genomes]
rs910153	1.00[ASN][1000 genomes]
rs9348988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348989	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9348990	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9366905	1.00[ASN][1000 genomes]
rs9368906	0.80[MKK][hapmap]
rs9368935	1.00[ASN][1000 genomes]
rs9380562	1.00[ASN][1000 genomes]
rs9394338	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11833800-11836000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:11834000-11836000	Enhancers	Fetal Heart	heart
3	chr6:11834200-11836400	Enhancers	Fetal Lung	lung
4	chr6:11835200-11836400	Enhancers	K562	blood
5	chr6:11835600-11836200	Enhancers	GM12878-XiMat	blood
6	chr6:11835800-11838200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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