Variant report

Variant	rs761372
Chromosome Location	chr6:11852554-11852555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11848626..11851271-chr6:11851850..11855072,3	K562	blood:
2	chr6:11843056..11848062-chr6:11852373..11856845,8	K562	blood:
3	chr6:11851522..11853386-chr6:11855084..11856597,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10807158	1.00[ASN][1000 genomes]
rs10947590	1.00[ASN][1000 genomes]
rs12213920	1.00[YRI][hapmap]
rs13190940	1.00[ASN][1000 genomes]
rs4499926	1.00[ASN][1000 genomes]
rs4499927	1.00[ASN][1000 genomes]
rs4569952	1.00[ASN][1000 genomes]
rs4711435	1.00[ASN][1000 genomes]
rs4711436	1.00[ASN][1000 genomes]
rs4711438	1.00[ASN][1000 genomes]
rs4711444	1.00[ASN][1000 genomes]
rs4711449	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713934	1.00[ASN][1000 genomes]
rs4713965	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713980	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457899	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457906	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905247	1.00[ASN][1000 genomes]
rs6920198	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761373	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739740	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758167	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910153	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296175	0.86[GIH][hapmap]
rs9348988	1.00[ASN][1000 genomes]
rs9366905	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368935	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380562	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394338	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394354	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9394355	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs761372	RPL37	trans	brain	seeQTL

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:11847200-11854600	Weak transcription	Gastric	stomach
4	chr6:11849000-11853800	Weak transcription	Stomach Mucosa	stomach
5	chr6:11849000-11854000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel
8	chr6:11850200-11852600	Weak transcription	Liver	Liver
9	chr6:11850200-11852600	Weak transcription	Fetal Lung	lung
10	chr6:11850400-11854800	Weak transcription	Pancreas	Pancrea
11	chr6:11851000-11852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:11851000-11853000	Enhancers	HSMM	muscle
13	chr6:11851200-11852600	Enhancers	HMEC	breast
14	chr6:11851800-11852800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:11851800-11852800	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:11851800-11854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:11852000-11852600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:11852000-11852600	Active TSS	Psoas Muscle	Psoas
19	chr6:11852000-11852600	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr6:11852000-11852800	Weak transcription	Fetal Kidney	kidney
21	chr6:11852000-11853000	Active TSS	Brain Hippocampus Middle	brain
22	chr6:11852000-11853200	Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr6:11852000-11854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:11852000-11854600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:11852000-11854600	Weak transcription	NHEK	skin
26	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:11852200-11853200	Active TSS	Brain Anterior Caudate	brain
28	chr6:11852200-11854000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:11852200-11854000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:11852200-11854400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:11852400-11852600	Active TSS	Brain Substantia Nigra	brain
32	chr6:11852400-11852600	Enhancers	Fetal Brain Female	brain
33	chr6:11852400-11852600	Enhancers	HSMMtube	muscle
34	chr6:11852400-11852600	Active TSS	NH-A	brain
35	chr6:11852400-11852800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr6:11852400-11852800	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr6:11852400-11852800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:11852400-11852800	Flanking Active TSS	Fetal Muscle Leg	muscle
39	chr6:11852400-11852800	Active TSS	GM12878-XiMat	blood
40	chr6:11852400-11854000	Weak transcription	Osteobl	bone
41	chr6:11852400-11854600	Weak transcription	Hela-S3	cervix
42	chr6:11852400-11854600	Weak transcription	NHDF-Ad	bronchial
43	chr6:11852400-11855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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