Variant report

Variant	rs9366905
Chromosome Location	chr6:11869456-11869457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11864063..11866982-chr6:11867941..11870630,2	K562	blood:
2	chr6:11868745..11870307-chr6:11874002..11876924,2	K562	blood:
3	chr6:11867657..11870618-chr6:11870825..11872427,2	K562	blood:
4	chr6:11867335..11870900-chr6:11873220..11876785,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10807158	1.00[ASN][1000 genomes]
rs10947590	1.00[ASN][1000 genomes]
rs13190940	1.00[ASN][1000 genomes]
rs4499926	1.00[ASN][1000 genomes]
rs4499927	1.00[ASN][1000 genomes]
rs4569952	1.00[ASN][1000 genomes]
rs4711435	1.00[ASN][1000 genomes]
rs4711436	1.00[ASN][1000 genomes]
rs4711438	1.00[ASN][1000 genomes]
rs4711444	1.00[ASN][1000 genomes]
rs4711449	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713934	1.00[ASN][1000 genomes]
rs4713965	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457899	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457906	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457908	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905247	1.00[ASN][1000 genomes]
rs6920198	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761372	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761373	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739740	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746013	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758167	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910153	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348988	1.00[ASN][1000 genomes]
rs9368935	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380562	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394338	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394354	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394355	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11866400-11870000	Weak transcription	Osteobl	bone
2	chr6:11866600-11869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11866600-11869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:11866600-11869800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:11866600-11870000	Weak transcription	NHDF-Ad	bronchial
6	chr6:11868400-11870200	Enhancers	Fetal Heart	heart
7	chr6:11868600-11871200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:11868600-11871200	Enhancers	Fetal Stomach	stomach
9	chr6:11868600-11871400	Enhancers	Fetal Lung	lung
10	chr6:11868600-11871400	Enhancers	Ovary	ovary
11	chr6:11868800-11870000	Weak transcription	Lung	lung
12	chr6:11868800-11870400	Weak transcription	Pancreas	Pancrea
13	chr6:11868800-11870400	Weak transcription	Spleen	Spleen
14	chr6:11869000-11869600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:11869000-11885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11869200-11869600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:11869200-11870600	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:11869200-11871000	Enhancers	NHLF	lung
19	chr6:11869400-11870000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:11869400-11870000	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:11869400-11870400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:11869400-11870400	Weak transcription	Left Ventricle	heart
23	chr6:11869400-11871200	Enhancers	Liver	Liver
24	chr6:11869400-11871200	Enhancers	Hela-S3	cervix

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