Variant report

Variant	rs4713965
Chromosome Location	chr6:11854600-11854601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11854081..11855921-chr6:11860130..11862778,2	MCF-7	breast:
2	chr6:11848626..11851271-chr6:11851850..11855072,3	K562	blood:
3	chr6:11843056..11848062-chr6:11852373..11856845,8	K562	blood:
4	chr6:11853455..11855505-chr6:11871944..11874636,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10807158	1.00[ASN][1000 genomes]
rs10947590	1.00[ASN][1000 genomes]
rs13190940	1.00[ASN][1000 genomes]
rs4499926	1.00[ASN][1000 genomes]
rs4499927	1.00[ASN][1000 genomes]
rs4569952	1.00[ASN][1000 genomes]
rs4711435	1.00[ASN][1000 genomes]
rs4711436	1.00[ASN][1000 genomes]
rs4711438	1.00[ASN][1000 genomes]
rs4711444	1.00[ASN][1000 genomes]
rs4711449	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713934	1.00[ASN][1000 genomes]
rs4713980	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457906	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457908	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905247	1.00[ASN][1000 genomes]
rs6920198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746013	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758167	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348988	1.00[ASN][1000 genomes]
rs9366905	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368935	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380562	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394354	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9394355	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:11847200-11854600	Weak transcription	Gastric	stomach
3	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel
5	chr6:11850400-11854800	Weak transcription	Pancreas	Pancrea
6	chr6:11851800-11854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:11852000-11854600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:11852000-11854600	Weak transcription	NHEK	skin
9	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:11852400-11854600	Weak transcription	Hela-S3	cervix
11	chr6:11852400-11854600	Weak transcription	NHDF-Ad	bronchial
12	chr6:11852400-11855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:11852600-11854600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:11852600-11854600	Enhancers	Liver	Liver
15	chr6:11852600-11854800	Weak transcription	HMEC	breast
16	chr6:11852600-11855200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:11852600-11855200	Enhancers	Fetal Lung	lung
18	chr6:11852600-11855200	Enhancers	Fetal Stomach	stomach
19	chr6:11852800-11854600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:11852800-11854800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:11852800-11855400	Enhancers	Fetal Muscle Leg	muscle
22	chr6:11853000-11855200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:11853200-11854800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:11853200-11855200	Enhancers	Colon Smooth Muscle	Colon
25	chr6:11853200-11855400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:11853800-11855200	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:11853800-11855200	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:11853800-11855200	Enhancers	Stomach Mucosa	stomach
29	chr6:11853800-11855600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:11853800-11855600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:11854000-11854800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:11854000-11854800	Enhancers	Brain Cingulate Gyrus	brain
33	chr6:11854000-11855000	Enhancers	Ovary	ovary
34	chr6:11854000-11855200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:11854000-11855200	Enhancers	Adipose Nuclei	Adipose
36	chr6:11854000-11855200	Enhancers	Aorta	Aorta
37	chr6:11854000-11855200	Enhancers	HSMMtube	muscle
38	chr6:11854000-11855200	Enhancers	NHLF	lung
39	chr6:11854000-11855800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:11854000-11855800	Enhancers	Osteobl	bone
41	chr6:11854200-11854600	Weak transcription	HSMM	muscle
42	chr6:11854200-11854600	Weak transcription	NH-A	brain
43	chr6:11854200-11854800	Enhancers	Stomach Smooth Muscle	stomach
44	chr6:11854200-11855000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:11854200-11855000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:11854400-11855600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:11854400-11856600	ZNF genes & repeats	GM12878-XiMat	blood
48	chr6:11854600-11855000	Flanking Active TSS	Liver	Liver
49	chr6:11854600-11855000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr6:11854600-11855200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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