Variant report

Variant	rs9394338
Chromosome Location	chr6:11845608-11845609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11844746..11849186-chr6:12011499..12014000,4	MCF-7	breast:
2	chr6:11843056..11848062-chr6:11852373..11856845,8	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10807158	1.00[ASN][1000 genomes]
rs10947590	1.00[ASN][1000 genomes]
rs13190940	1.00[ASN][1000 genomes]
rs4499926	1.00[ASN][1000 genomes]
rs4499927	1.00[ASN][1000 genomes]
rs4569952	1.00[ASN][1000 genomes]
rs4711435	1.00[ASN][1000 genomes]
rs4711436	1.00[ASN][1000 genomes]
rs4711438	1.00[ASN][1000 genomes]
rs4711444	1.00[ASN][1000 genomes]
rs4711449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713934	1.00[ASN][1000 genomes]
rs4713965	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713980	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457906	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457908	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905247	1.00[ASN][1000 genomes]
rs6920198	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746013	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758167	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348988	1.00[ASN][1000 genomes]
rs9366905	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368935	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380562	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394354	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844400-11846200	Weak transcription	Liver	Liver
2	chr6:11844600-11854000	Weak transcription	NHLF	lung
3	chr6:11845600-11847000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:11845600-11847000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:11845600-11847000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:11845600-11847200	Enhancers	HMEC	breast
7	chr6:11845600-11848400	Enhancers	Placenta Amnion	Placenta Amnion

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