Variant report

Variant	rs9394354
Chromosome Location	chr6:11866682-11866683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4711449	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713935	0.83[ASN][1000 genomes]
rs4713965	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713980	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6457899	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457906	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457908	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6920198	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs761372	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs761373	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7739740	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7746013	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7758167	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs910153	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9366905	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9368935	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9380562	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9394338	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11859800-11867000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11863200-11868600	Weak transcription	Fetal Stomach	stomach
3	chr6:11865800-11867200	Enhancers	Fetal Intestine Large	intestine
4	chr6:11866000-11867000	Enhancers	Fetal Intestine Small	intestine
5	chr6:11866400-11867400	Weak transcription	NH-A	brain
6	chr6:11866400-11868400	Active TSS	Liver	Liver
7	chr6:11866400-11868600	Weak transcription	Fetal Lung	lung
8	chr6:11866400-11870000	Weak transcription	Osteobl	bone
9	chr6:11866600-11868600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:11866600-11869000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:11866600-11869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:11866600-11869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:11866600-11869800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:11866600-11870000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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