Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10456168	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10456676	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12190914	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2006013	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34299171	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6458973	0.81[EUR][1000 genomes]
rs6902746	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6907354	0.81[EUR][1000 genomes]
rs6909052	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909056	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6909350	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6928440	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6935942	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7744962	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7769351	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7773779	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9367545	0.85[AMR][1000 genomes]
rs9395890	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9395891	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9395892	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53827400-53832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:53827400-53832200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:53827400-53832200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:53827400-53836000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:53827400-53836000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:53827800-53832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:53827800-53836000	Weak transcription	Psoas Muscle	Psoas

Quick Search: