Variant report

Variant	rs6907354
Chromosome Location	chr6:53805460-53805461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:53805147..53806830-chr6:53806869..53810156,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10456168	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10456676	0.82[AMR][1000 genomes]
rs10755768	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948790	0.81[EUR][1000 genomes]
rs12190914	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1883631	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2006013	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2050159	0.89[EUR][1000 genomes]
rs34299171	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6458973	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6902746	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6906326	0.85[EUR][1000 genomes]
rs6909052	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6909056	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909350	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6916929	0.88[EUR][1000 genomes]
rs6928440	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6935942	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7744962	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7769351	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7773779	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9357777	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370245	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9395890	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9395891	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9463996	0.89[EUR][1000 genomes]
rs9463997	0.89[EUR][1000 genomes]
rs9474671	0.88[EUR][1000 genomes]
rs9474680	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53787800-53807800	Weak transcription	Aorta	Aorta
2	chr6:53787800-53810800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:53794600-53807800	Weak transcription	Left Ventricle	heart
4	chr6:53794800-53815600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:53795200-53807400	Weak transcription	Fetal Stomach	stomach
6	chr6:53795600-53826200	Weak transcription	NHEK	skin
7	chr6:53799800-53810600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:53803800-53807400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:53805000-53806600	Weak transcription	Dnd41	blood

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