Variant report

Variant	rs9395891
Chromosome Location	chr6:53822219-53822220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:53819656..53822349-chr6:53824906..53826764,2	K562	blood:
2	chr6:53657866..53662110-chr6:53819817..53822603,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228614	Chromatin interaction
ENSG00000137269	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10456168	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10456676	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10755768	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948790	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190914	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2006013	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2050159	0.82[EUR][1000 genomes]
rs34299171	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458973	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6902746	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6906326	0.82[CEU][hapmap]
rs6907354	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6909052	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6909056	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6909350	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916929	0.81[EUR][1000 genomes]
rs6928440	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6935942	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763815	0.91[ASN][1000 genomes]
rs7744962	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7769351	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773779	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9357777	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9367545	0.90[AMR][1000 genomes]
rs9370245	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9395890	1.00[CEU][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9395892	0.88[AMR][1000 genomes]
rs9463996	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs9463997	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs9474671	0.81[EUR][1000 genomes]
rs9474680	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53795600-53826200	Weak transcription	NHEK	skin
2	chr6:53811400-53825000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:53819000-53827000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:53821400-53824200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:53821400-53824200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:53821400-53824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:53821600-53826400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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