Variant report

Variant	rs9370245
Chromosome Location	chr6:53803307-53803308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:53802203..53805380-chr6:53806061..53808380,3	K562	blood:
2	chr6:53798317..53800488-chr6:53802970..53804501,2	MCF-7	breast:
3	chr6:53791111..53793110-chr6:53802444..53804078,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10456168	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10456676	0.82[AMR][1000 genomes]
rs10755768	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190914	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1883631	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2006013	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2050159	0.88[EUR][1000 genomes]
rs2473601	0.88[AFR][1000 genomes]
rs2494089	0.87[AFR][1000 genomes]
rs2745460	0.81[AFR][1000 genomes]
rs34299171	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6458973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902746	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6906326	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs6907354	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6909052	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909056	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6909350	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6916929	0.87[EUR][1000 genomes]
rs6928440	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6935942	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7744962	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7769351	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7773779	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9357777	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395890	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9395891	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9463996	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9463997	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9474671	0.87[EUR][1000 genomes]
rs9474680	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53787800-53807800	Weak transcription	Aorta	Aorta
2	chr6:53787800-53810800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:53794600-53807800	Weak transcription	Left Ventricle	heart
4	chr6:53794800-53815600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:53795200-53803800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:53795200-53807400	Weak transcription	Fetal Stomach	stomach
7	chr6:53795600-53826200	Weak transcription	NHEK	skin
8	chr6:53799800-53810600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:53803000-53803400	Enhancers	Esophagus	oesophagus
10	chr6:53803200-53803400	Enhancers	HSMMtube	muscle
11	chr6:53803200-53803800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:53803200-53805000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links