Variant report
Variant | rs34299171 |
---|---|
Chromosome Location | chr6:53813570-53813571 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10456168 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10456676 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10755768 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10948790 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs12190914 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2006013 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2050159 | 0.80[EUR][1000 genomes] |
rs6458973 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6902746 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6907354 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6909052 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6909056 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6909350 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6928440 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6935942 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs763815 | 0.91[ASN][1000 genomes] |
rs7744962 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7769351 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7773779 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9357777 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs9367545 | 0.86[AMR][1000 genomes] |
rs9370245 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9395890 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs9395891 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9395892 | 0.84[AMR][1000 genomes] |
rs9463996 | 0.80[EUR][1000 genomes] |
rs9463997 | 0.80[EUR][1000 genomes] |
rs9474680 | 0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034955 | chr6:53447607-53931055 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | nsv830664 | chr6:53698021-53825270 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1067663 | chr6:53796341-54449718 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv529158 | chr6:53796341-54449718 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:53794800-53815600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr6:53795600-53826200 | Weak transcription | NHEK | skin |
3 | chr6:53811400-53825000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |