Variant report

Variant	rs12190914
Chromosome Location	chr6:53829682-53829683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456168	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10456676	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10755768	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10948790	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13437448	0.91[ASN][1000 genomes]
rs2006013	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34299171	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4398734	0.83[ASN][1000 genomes]
rs4712050	0.86[ASN][1000 genomes]
rs4712051	0.88[ASN][1000 genomes]
rs5006063	0.92[ASN][1000 genomes]
rs6458973	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6902746	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6907354	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6909052	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6909056	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6909350	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6927232	0.90[ASN][1000 genomes]
rs6928440	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935942	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs742525	0.83[ASN][1000 genomes]
rs7744962	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7769351	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7773779	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296727	0.91[ASN][1000 genomes]
rs9357777	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9367545	0.90[AMR][1000 genomes]
rs9370245	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9395890	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9395891	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9395892	0.88[AMR][1000 genomes]
rs9395893	0.83[ASN][1000 genomes]
rs9395894	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53827400-53832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:53827400-53832200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:53827400-53832200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:53827400-53836000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:53827400-53836000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:53827800-53832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:53827800-53836000	Weak transcription	Psoas Muscle	Psoas

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