Variant report

Variant	rs10979082
Chromosome Location	chr9:110646522-110646523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10448248	0.80[AMR][1000 genomes]
rs10979084	1.00[EUR][1000 genomes]
rs10979087	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10979088	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10979089	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10979094	0.83[AMR][1000 genomes]
rs10979096	0.80[AMR][1000 genomes]
rs10979097	0.80[AMR][1000 genomes]
rs10979098	0.80[AMR][1000 genomes]
rs10979103	0.81[JPT][hapmap]
rs12376157	0.83[AMR][1000 genomes]
rs12379423	0.81[JPT][hapmap]
rs34048749	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110644400-110647000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110644400-110651000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:110645400-110646800	Enhancers	Primary B cells from cord blood	blood
6	chr9:110645400-110646800	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:110645600-110646600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr9:110645600-110646800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:110646000-110646600	Enhancers	Adipose Nuclei	Adipose
10	chr9:110646000-110646800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:110646000-110646800	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:110646200-110646600	Enhancers	GM12878-XiMat	blood
13	chr9:110646200-110651000	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:110646400-110651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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