Variant report

Variant	rs10979096
Chromosome Location	chr9:110670421-110670422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110666092..110668154-chr9:110669795..110672142,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10448248	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10512377	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979082	0.80[AMR][1000 genomes]
rs10979087	0.88[AMR][1000 genomes]
rs10979088	0.88[AMR][1000 genomes]
rs10979089	0.85[AMR][1000 genomes]
rs10979094	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979095	0.97[EUR][1000 genomes]
rs10979097	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979098	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979102	0.97[EUR][1000 genomes]
rs10979103	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979105	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979106	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979109	0.95[EUR][1000 genomes]
rs12376157	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12376697	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12377933	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12379423	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12380068	0.91[ASN][1000 genomes]
rs1888615	0.80[EUR][1000 genomes]
rs2210328	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34048749	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110666800-110670800	Enhancers	Fetal Muscle Leg	muscle
2	chr9:110667000-110671000	Enhancers	Brain Cingulate Gyrus	brain
3	chr9:110668800-110672200	Weak transcription	Psoas Muscle	Psoas
4	chr9:110669400-110671000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr9:110670000-110670600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:110670000-110670600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:110670000-110670600	Active TSS	Brain Substantia Nigra	brain
8	chr9:110670200-110670800	Enhancers	Brain Angular Gyrus	brain
9	chr9:110670400-110670800	Active TSS	Brain Hippocampus Middle	brain

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