Variant report

Variant	rs10979109
Chromosome Location	chr9:110694052-110694053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10448248	0.93[EUR][1000 genomes]
rs10512377	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10979094	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10979095	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10979096	0.95[EUR][1000 genomes]
rs10979097	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10979098	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10979102	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10979103	0.84[CHB][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10979105	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10979106	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12376157	0.95[EUR][1000 genomes]
rs12376697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12377933	0.95[EUR][1000 genomes]
rs12379423	0.85[CHB][hapmap];0.97[EUR][1000 genomes]
rs12380068	0.87[ASN][1000 genomes]
rs1888615	0.85[EUR][1000 genomes]
rs2210328	0.95[EUR][1000 genomes]
rs34048749	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110687000-110694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:110690600-110696000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110691800-110694200	Enhancers	Duodenum Mucosa	Duodenum
4	chr9:110692600-110694800	Weak transcription	Small Intestine	intestine
5	chr9:110693200-110694200	Enhancers	Fetal Intestine Large	intestine
6	chr9:110693200-110694200	Enhancers	Fetal Intestine Small	intestine
7	chr9:110693200-110695400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:110693400-110694200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr9:110693400-110694400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr9:110693600-110694200	Enhancers	Stomach Mucosa	stomach
11	chr9:110693600-110695800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:110693600-110696200	Enhancers	NHDF-Ad	bronchial
13	chr9:110693800-110694800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:110693800-110695400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:110693800-110695400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:110694000-110695600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:110694000-110696200	Enhancers	Osteobl	bone
18	chr9:110694000-110701000	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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