Variant report

Variant	rs12377933
Chromosome Location	chr9:110674139-110674140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10448248	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512377	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979094	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979095	0.97[EUR][1000 genomes]
rs10979096	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10979097	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979098	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979102	0.97[EUR][1000 genomes]
rs10979103	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979105	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10979106	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10979109	0.95[EUR][1000 genomes]
rs12376157	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12376697	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12379423	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12380068	0.87[ASN][1000 genomes]
rs1888615	0.80[EUR][1000 genomes]
rs2210328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34048749	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110671000-110674600	Weak transcription	Brain Hippocampus Middle	brain
2	chr9:110672200-110675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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