Variant report

Variant	rs10979094
Chromosome Location	chr9:110670174-110670175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110666092..110668154-chr9:110669795..110672142,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10448248	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10512377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979082	0.83[AMR][1000 genomes]
rs10979087	0.90[AMR][1000 genomes]
rs10979088	0.90[AMR][1000 genomes]
rs10979089	0.87[AMR][1000 genomes]
rs10979095	0.97[EUR][1000 genomes]
rs10979096	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10979097	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979102	0.97[EUR][1000 genomes]
rs10979103	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10979105	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979106	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979109	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12376157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12376697	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12377933	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12379423	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12380068	0.93[ASN][1000 genomes]
rs1888615	0.80[EUR][1000 genomes]
rs2210328	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34048749	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110666800-110670400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:110666800-110670800	Enhancers	Fetal Muscle Leg	muscle
3	chr9:110667000-110670400	Enhancers	Brain Hippocampus Middle	brain
4	chr9:110667000-110671000	Enhancers	Brain Cingulate Gyrus	brain
5	chr9:110668800-110672200	Weak transcription	Psoas Muscle	Psoas
6	chr9:110669400-110671000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr9:110669800-110670400	Enhancers	Adipose Nuclei	Adipose
8	chr9:110670000-110670200	Weak transcription	Brain Angular Gyrus	brain
9	chr9:110670000-110670600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:110670000-110670600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:110670000-110670600	Active TSS	Brain Substantia Nigra	brain

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