Variant report

Variant	rs10979089
Chromosome Location	chr9:110657447-110657448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110656736..110659365-chr9:110662129..110664911,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10448248	0.90[AMR][1000 genomes]
rs10979082	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10979087	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979088	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979094	0.87[AMR][1000 genomes]
rs10979096	0.85[AMR][1000 genomes]
rs10979097	0.90[AMR][1000 genomes]
rs10979098	0.85[AMR][1000 genomes]
rs12376157	0.87[AMR][1000 genomes]
rs34048749	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110644800-110658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:110656200-110659400	Enhancers	Fetal Stomach	stomach
3	chr9:110656600-110657600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:110656600-110658800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:110656600-110659200	Enhancers	Rectal Smooth Muscle	rectum
6	chr9:110656600-110659400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:110656800-110658000	Enhancers	Placenta	Placenta
8	chr9:110656800-110659000	Enhancers	Colon Smooth Muscle	Colon
9	chr9:110656800-110659400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:110657000-110657600	Flanking Active TSS	Fetal Lung	lung
11	chr9:110657000-110657600	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr9:110657000-110658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:110657000-110658200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:110657000-110658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:110657000-110658400	Enhancers	Ovary	ovary
16	chr9:110657000-110658400	Enhancers	NHDF-Ad	bronchial
17	chr9:110657200-110657600	Weak transcription	HMEC	breast
18	chr9:110657200-110658200	Enhancers	Adipose Nuclei	Adipose
19	chr9:110657200-110658200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr9:110657200-110659800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:110657200-110660800	Weak transcription	Fetal Intestine Small	intestine
22	chr9:110657200-110661200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:110657200-110661600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr9:110657400-110657600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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