Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10448248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10512377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979082	0.80[AMR][1000 genomes]
rs10979087	0.87[AMR][1000 genomes]
rs10979088	0.87[AMR][1000 genomes]
rs10979089	0.90[AMR][1000 genomes]
rs10979094	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979095	0.95[EUR][1000 genomes]
rs10979096	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979097	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979098	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979102	0.95[EUR][1000 genomes]
rs10979103	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979105	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10979106	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10979109	0.93[EUR][1000 genomes]
rs12376157	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12376697	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12377933	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12379423	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12380068	0.89[ASN][1000 genomes]
rs2210328	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110657200-110661200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:110657200-110661600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:110658000-110668000	Weak transcription	Placenta	Placenta
4	chr9:110659200-110661000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:110660600-110661600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:110660800-110661000	Enhancers	Fetal Brain Male	brain
7	chr9:110660800-110661600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:110660800-110661600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:110660800-110661800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:110660800-110661800	Enhancers	Brain Hippocampus Middle	brain
11	chr9:110660800-110662200	Enhancers	Fetal Intestine Small	intestine
12	chr9:110660800-110662200	Enhancers	Fetal Muscle Leg	muscle
13	chr9:110660800-110662600	Enhancers	Fetal Stomach	stomach

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