Variant report

Variant	rs10979105
Chromosome Location	chr9:110691176-110691177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10448248	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10512377	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10979094	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979095	0.97[EUR][1000 genomes]
rs10979096	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10979097	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979098	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10979102	0.97[EUR][1000 genomes]
rs10979103	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10979106	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979109	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12376157	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12376697	1.00[EUR][1000 genomes]
rs12377933	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12379423	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12380068	0.99[ASN][1000 genomes]
rs1888615	0.85[EUR][1000 genomes]
rs2210328	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34048749	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110685400-110691800	Weak transcription	Fetal Stomach	stomach
2	chr9:110687000-110694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:110689000-110692800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:110689400-110691800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110689800-110691200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:110690200-110692000	Weak transcription	NHDF-Ad	bronchial
7	chr9:110690600-110696000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:110691000-110691200	Enhancers	Placenta	Placenta
9	chr9:110691000-110691200	Enhancers	Right Atrium	heart
10	chr9:110691000-110692400	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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