Variant report

Variant	rs10981664
Chromosome Location	chr9:100097344-100097345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10114464	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10115892	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10116686	0.85[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10116963	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10118493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10121540	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10123199	0.88[AFR][1000 genomes]
rs10435869	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10759619	0.81[LWK][hapmap]
rs10817266	1.00[JPT][hapmap]
rs10817347	0.87[AFR][1000 genomes]
rs10817369	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10817378	0.86[ASW][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10981062	1.00[GIH][hapmap]
rs10981301	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10981428	0.86[ASN][1000 genomes]
rs10981477	0.91[ASN][1000 genomes]
rs10981495	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs10981569	0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10981625	0.85[LWK][hapmap]
rs10981647	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10981661	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10981759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11535503	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11787986	0.88[AFR][1000 genomes]
rs12238604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12682916	0.87[AFR][1000 genomes]
rs2061634	0.85[LWK][hapmap]
rs2290936	0.87[AFR][1000 genomes]
rs2401383	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28628235	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28669226	0.88[AFR][1000 genomes]
rs28864177	0.86[AFR][1000 genomes]
rs3747500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3747501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3747502	0.93[ASW][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3747505	0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs3747509	0.93[ASW][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4345679	0.82[LWK][hapmap]
rs4436243	0.93[ASW][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs4526475	0.85[AFR][1000 genomes]
rs4623562	0.87[AFR][1000 genomes]
rs58100566	0.80[AFR][1000 genomes]
rs59602329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7025132	0.93[ASW][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs73565811	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73656804	0.96[AMR][1000 genomes]
rs7466408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7847332	0.85[LWK][hapmap]
rs7849353	1.00[JPT][hapmap];0.88[AFR][1000 genomes]
rs7851443	0.80[AFR][1000 genomes]
rs7854563	0.85[AFR][1000 genomes]
rs7855042	0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7855956	0.81[LWK][hapmap]
rs7858368	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7864190	0.87[AFR][1000 genomes]
rs7872384	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762823	chr9:100083872-100105782	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100070000-100098000	Weak transcription	Small Intestine	intestine
2	chr9:100070000-100100200	Weak transcription	Fetal Heart	heart
3	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
4	chr9:100077000-100106400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:100077000-100140800	Weak transcription	Fetal Brain Male	brain
6	chr9:100080400-100126400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:100083800-100098400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:100083800-100124000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:100085600-100099800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:100085600-100100200	Weak transcription	Primary B cells from cord blood	blood
11	chr9:100086400-100110400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:100086600-100121600	Weak transcription	Right Ventricle	heart
13	chr9:100086600-100132000	Weak transcription	Thymus	Thymus
14	chr9:100086800-100104000	Weak transcription	Dnd41	blood
15	chr9:100088000-100126200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:100088200-100127000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:100088400-100098600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:100088600-100128600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:100088600-100132800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr9:100088800-100103800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:100088800-100121400	Weak transcription	Gastric	stomach
22	chr9:100089000-100104000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:100089000-100104000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:100089200-100102800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:100089200-100128200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:100090600-100104200	Weak transcription	Liver	Liver
27	chr9:100090600-100119000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:100090600-100133800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr9:100091000-100102600	Weak transcription	Lung	lung
30	chr9:100091200-100106400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:100091400-100097800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:100091600-100102800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr9:100091600-100103000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:100091600-100103800	Weak transcription	Spleen	Spleen
35	chr9:100091600-100106400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:100091600-100149200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:100092000-100105400	Weak transcription	Primary T cells from cord blood	blood
38	chr9:100093000-100102800	Weak transcription	Fetal Stomach	stomach
39	chr9:100093000-100104000	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:100093000-100105600	Weak transcription	Fetal Lung	lung
41	chr9:100093000-100111000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr9:100093000-100117000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:100093600-100102800	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:100093600-100103800	Weak transcription	Aorta	Aorta
45	chr9:100093600-100106400	Weak transcription	Left Ventricle	heart
46	chr9:100093600-100122400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:100093800-100104000	Weak transcription	Ovary	ovary
48	chr9:100094600-100109400	Weak transcription	Brain Angular Gyrus	brain
49	chr9:100095200-100097400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr9:100095200-100102800	Weak transcription	Brain Germinal Matrix	brain

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