Variant report

Variant	rs4436243
Chromosome Location	chr9:100040730-100040731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10114803	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10115892	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10116686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116963	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118493	0.88[AFR][1000 genomes]
rs10121540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10123199	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435869	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10817266	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10817311	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10817347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817378	0.93[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10981301	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10981371	0.91[AMR][1000 genomes]
rs10981495	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10981569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981661	0.93[ASW][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs10981664	0.93[ASW][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs10981759	0.83[AFR][1000 genomes]
rs11787986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238604	0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs12682916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290936	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2401383	0.93[ASW][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs28628235	0.90[AFR][1000 genomes]
rs28669226	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28864177	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747500	0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs3747501	0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs3747502	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747509	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4526475	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45498203	0.93[EUR][1000 genomes]
rs4623562	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58100566	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59602329	0.84[AFR][1000 genomes]
rs7024183	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7025132	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7030763	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7042820	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73559817	0.97[EUR][1000 genomes]
rs73654687	0.81[ASN][1000 genomes]
rs7466408	0.85[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs7469441	0.87[EUR][1000 genomes]
rs7849353	0.85[CHB][hapmap];0.84[JPT][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7851443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7854563	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7855042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858368	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7864190	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7872384	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100024400-100042600	Weak transcription	Fetal Heart	heart
2	chr9:100025800-100050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:100036400-100042600	Weak transcription	Colonic Mucosa	Colon
5	chr9:100036800-100052200	Weak transcription	Stomach Mucosa	stomach
6	chr9:100037200-100050200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:100037400-100047000	Strong transcription	Fetal Muscle Trunk	muscle
8	chr9:100037800-100046600	Strong transcription	Stomach Smooth Muscle	stomach
9	chr9:100038200-100050600	Weak transcription	Esophagus	oesophagus
10	chr9:100038400-100041800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:100038600-100040800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:100038600-100041400	Strong transcription	Brain Cingulate Gyrus	brain
13	chr9:100038600-100041400	Strong transcription	Fetal Intestine Small	intestine
14	chr9:100038600-100041600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:100038600-100042000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:100038600-100043800	Weak transcription	Psoas Muscle	Psoas
17	chr9:100038600-100044000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:100038600-100044400	Strong transcription	Fetal Intestine Large	intestine
19	chr9:100038600-100044600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:100038600-100045800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:100038600-100046800	Strong transcription	Brain Anterior Caudate	brain
22	chr9:100038600-100047600	Weak transcription	HepG2	liver
23	chr9:100038800-100040800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:100038800-100041400	Strong transcription	Right Ventricle	heart
25	chr9:100038800-100041600	Strong transcription	Aorta	Aorta
26	chr9:100038800-100041600	Strong transcription	Brain Angular Gyrus	brain
27	chr9:100038800-100041600	Strong transcription	Fetal Stomach	stomach
28	chr9:100038800-100044800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr9:100038800-100046400	Strong transcription	Ovary	ovary
30	chr9:100038800-100047200	Strong transcription	Liver	Liver
31	chr9:100038800-100050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:100039000-100041400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:100039000-100043400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:100039000-100044000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:100039000-100046400	Strong transcription	Fetal Muscle Leg	muscle
36	chr9:100039000-100047000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:100039000-100047000	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:100039000-100050600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:100039000-100052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:100039000-100053000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:100039000-100054200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:100039200-100040800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr9:100039200-100040800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr9:100039200-100052800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr9:100039200-100056400	Weak transcription	Small Intestine	intestine
46	chr9:100039400-100041400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:100039400-100041400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:100039400-100041400	Strong transcription	Pancreas	Pancrea
49	chr9:100039400-100041400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr9:100039400-100041400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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