Variant report

Variant	rs10121540
Chromosome Location	chr9:100055207-100055208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100053928..100055918-chr9:100059325..100061044,2	K562	blood:
2	chr9:100048229..100050188-chr9:100053793..100055688,2	MCF-7	breast:
3	chr9:100000136..100002167-chr9:100054201..100057002,2	K562	blood:

Variant related genes	Relation type
ENSG00000254876	Chromatin interaction
ENSG00000254483	Chromatin interaction
ENSG00000203279	Chromatin interaction
ENSG00000197816	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10114803	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10115892	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10116686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10116963	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10118493	0.88[AFR][1000 genomes]
rs10123199	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435869	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10817266	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10817311	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10817347	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10981301	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10981371	0.85[AMR][1000 genomes]
rs10981495	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10981569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981661	0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10981664	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10981759	0.84[AFR][1000 genomes]
rs11787986	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12238604	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12682916	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290936	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401383	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28628235	0.91[AFR][1000 genomes]
rs28669226	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28864177	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3747500	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3747501	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs3747502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747505	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4436243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4526475	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45498203	0.96[EUR][1000 genomes]
rs4623562	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58100566	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59602329	0.85[AFR][1000 genomes]
rs7024183	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7025132	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7030763	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7042820	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73559817	1.00[EUR][1000 genomes]
rs73654687	0.81[ASN][1000 genomes]
rs7466408	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7469441	0.90[EUR][1000 genomes]
rs7849353	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851443	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7854563	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7855042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7858368	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7864190	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872384	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:100039200-100056400	Weak transcription	Small Intestine	intestine
3	chr9:100039600-100055600	Weak transcription	NH-A	brain
4	chr9:100039800-100055600	Weak transcription	NHLF	lung
5	chr9:100040800-100055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:100041400-100059600	Weak transcription	Fetal Brain Male	brain
7	chr9:100046000-100055400	Weak transcription	Fetal Heart	heart
8	chr9:100046200-100056400	Weak transcription	A549	lung
9	chr9:100046600-100069000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:100047800-100058000	Strong transcription	Primary T cells from cord blood	blood
11	chr9:100048000-100055600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:100049000-100057600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:100049000-100057600	Strong transcription	Liver	Liver
14	chr9:100049200-100056000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr9:100049600-100055400	Strong transcription	Brain Inferior Temporal Lobe	brain
16	chr9:100049600-100056600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:100049600-100057800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:100049600-100058600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:100050000-100055400	Strong transcription	Brain Cingulate Gyrus	brain
20	chr9:100050000-100055400	Strong transcription	Fetal Stomach	stomach
21	chr9:100050000-100055600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:100050000-100056000	Strong transcription	Pancreas	Pancrea
23	chr9:100050000-100056400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr9:100050000-100057800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:100050400-100056600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr9:100050400-100058000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:100050600-100058200	Strong transcription	Fetal Intestine Small	intestine
28	chr9:100051000-100056000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr9:100051200-100061000	Weak transcription	Colonic Mucosa	Colon
30	chr9:100051400-100055400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:100051400-100059400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr9:100052200-100059000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:100052600-100055400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:100052600-100055800	Strong transcription	Brain Germinal Matrix	brain
35	chr9:100052800-100055400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr9:100052800-100055800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:100052800-100056600	Strong transcription	Dnd41	blood
38	chr9:100052800-100057000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:100052800-100057200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:100052800-100057800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:100052800-100058000	Strong transcription	Fetal Brain Female	brain
42	chr9:100052800-100058400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:100053000-100058000	Strong transcription	Aorta	Aorta
44	chr9:100053200-100056800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr9:100053400-100057400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:100053600-100056200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:100053600-100056200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr9:100053600-100059200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr9:100053600-100061400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr9:100053600-100062600	Weak transcription	Hela-S3	cervix

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