Variant report

Variant	rs45498203
Chromosome Location	chr9:100069648-100069649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr9:100069417-100069684	GM12878	blood:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
2	POLR2A	chr9:100069232-100070088	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr9:100069500-100069650	HFF-Myc	foreskin:	n/a	n/a
4	MAZ	chr9:100069310-100069841	IMR90	lung:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
5	CTCF	chr9:100069419-100069663	Fibrobl	skin:	n/a	n/a
6	POLR2A	chr9:100069344-100069722	H1-hESC	embryonic stem cell:	n/a	n/a
7	RAD21	chr9:100069311-100069752	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr9:100069296-100069752	H1-hESC	embryonic stem cell:	n/a	n/a
9	USF1	chr9:100069253-100069746	ECC-1	luminal epithelium:	n/a	chr9:100069722-100069738
10	EGR1	chr9:100069426-100069665	GM12878	blood:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562
11	MAX	chr9:100069279-100069821	ECC-1	luminal epithelium:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
12	MAX	chr9:100069326-100069851	ECC-1	luminal epithelium:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
13	USF2	chr9:100069315-100069678	H1-hESC	embryonic stem cell:	n/a	n/a
14	ZNF143	chr9:100069299-100069831	H1-hESC	embryonic stem cell:	n/a	n/a
15	SIN3AK20	chr9:100069422-100069684	H1-hESC	embryonic stem cell:	n/a	n/a
16	EGR1	chr9:100069408-100069682	K562	blood:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
17	MYC	chr9:100069285-100069702	H1-hESC	embryonic stem cell:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
18	EGR1	chr9:100069273-100069736	H1-hESC	embryonic stem cell:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
19	MAX	chr9:100069288-100069907	H1-hESC	embryonic stem cell:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
20	SIN3A	chr9:100069272-100069855	H1-hESC	embryonic stem cell:	n/a	n/a
21	TAF1	chr9:100069190-100069832	H1-hESC	embryonic stem cell:	n/a	n/a
22	EGR1	chr9:100069348-100069736	H1-hESC	embryonic stem cell:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
23	EGR1	chr9:100069350-100069823	ECC-1	luminal epithelium:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
24	RAD21	chr9:100069365-100069767	ECC-1	luminal epithelium:	n/a	n/a
25	EGR1	chr9:100069403-100069689	K562	blood:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
26	USF1	chr9:100069297-100069675	ECC-1	luminal epithelium:	n/a	n/a
27	CTCF	chr9:100069294-100069651	H1-hESC	embryonic stem cell:	n/a	n/a
28	USF1	chr9:100069251-100069764	H1-hESC	embryonic stem cell:	n/a	chr9:100069722-100069738
29	MAX	chr9:100069325-100069649	K562	blood:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
30	JUN	chr9:100069384-100069714	H1-hESC	embryonic stem cell:	n/a	n/a
31	EGR1	chr9:100069327-100069805	ECC-1	luminal epithelium:	n/a	chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069565 chr9:100069546-100069568 chr9:100069549-100069564 chr9:100069551-100069562 chr9:100069550-100069564 chr9:100069550-100069563 chr9:100069555-100069565 chr9:100069553-100069562 chr9:100069552-100069562 chr9:100069550-100069563 chr9:100069551-100069562 chr9:100069424-100069448
32	SP1	chr9:100069188-100069805	H1-hESC	embryonic stem cell:	n/a	chr9:100069555-100069564 chr9:100069554-100069566 chr9:100069573-100069587 chr9:100069555-100069565 chr9:100069556-100069565 chr9:100069455-100069466 chr9:100069555-100069565 chr9:100069554-100069566
33	TBP	chr9:100069286-100069683	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr9:100069009-100070004	H1-hESC	embryonic stem cell:	n/a	n/a
35	USF1	chr9:100069354-100069693	K562	blood:	n/a	n/a
36	MXI1	chr9:100069481-100069672	K562	blood:	n/a	chr9:100069500-100069509 chr9:100069498-100069507 chr9:100069586-100069601
37	MAX	chr9:100069278-100069740	H1-hESC	embryonic stem cell:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597
38	CTCF	chr9:100069500-100069650	HAc	cerebellar:	n/a	n/a
39	SIN3AK20	chr9:100069385-100069814	H1-hESC	embryonic stem cell:	n/a	n/a
40	MXI1	chr9:100069310-100069759	H1-hESC	embryonic stem cell:	n/a	chr9:100069500-100069509 chr9:100069498-100069507 chr9:100069586-100069601
41	MAX	chr9:100069197-100069841	H1-hESC	embryonic stem cell:	n/a	chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069499-100069508 chr9:100069501-100069510 chr9:100069555-100069565 chr9:100069588-100069597

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TDRD7-1	chr9:100069586-100069653	NONHSAT133495

Variant related genes	Relation type
CCDC180	TF binding region

rs_ID	r²[population]
rs10114464	0.92[EUR][1000 genomes]
rs10116686	0.93[EUR][1000 genomes]
rs10116963	0.93[EUR][1000 genomes]
rs10121540	0.96[EUR][1000 genomes]
rs10123199	0.96[EUR][1000 genomes]
rs10817347	0.88[EUR][1000 genomes]
rs10817369	0.93[EUR][1000 genomes]
rs10981569	0.96[EUR][1000 genomes]
rs11787986	0.93[EUR][1000 genomes]
rs11792076	0.81[AMR][1000 genomes]
rs12682916	0.90[EUR][1000 genomes]
rs2290936	0.96[EUR][1000 genomes]
rs28669226	0.93[EUR][1000 genomes]
rs28864177	0.93[EUR][1000 genomes]
rs3747502	0.96[EUR][1000 genomes]
rs3747505	0.96[EUR][1000 genomes]
rs3747509	0.96[EUR][1000 genomes]
rs4436243	0.93[EUR][1000 genomes]
rs4526475	0.96[EUR][1000 genomes]
rs4623562	0.96[EUR][1000 genomes]
rs58100566	0.85[EUR][1000 genomes]
rs73559817	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469441	0.86[EUR][1000 genomes]
rs7849353	0.96[EUR][1000 genomes]
rs7851443	0.85[EUR][1000 genomes]
rs7854563	0.96[EUR][1000 genomes]
rs7855042	0.93[EUR][1000 genomes]
rs7858368	0.85[EUR][1000 genomes]
rs7864190	0.96[EUR][1000 genomes]
rs7872384	0.88[EUR][1000 genomes]

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:100057400-100075400	Weak transcription	Dnd41	blood
3	chr9:100060200-100071600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:100068800-100069800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:100068800-100071600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:100068800-100074200	Weak transcription	Thymus	Thymus
7	chr9:100069000-100070000	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr9:100069000-100070000	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr9:100069000-100070200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:100069000-100070200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:100069000-100070400	Flanking Active TSS	Brain Cingulate Gyrus	brain
12	chr9:100069000-100070400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr9:100069000-100070400	Flanking Active TSS	Osteobl	bone
14	chr9:100069200-100069800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:100069200-100069800	Bivalent Enhancer	Placenta	Placenta
16	chr9:100069200-100069800	Bivalent Enhancer	HUVEC	blood vessel
17	chr9:100069200-100069800	Bivalent Enhancer	NHDF-Ad	bronchial
18	chr9:100069200-100070000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:100069200-100070000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:100069200-100070000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr9:100069200-100070000	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr9:100069200-100070000	Active TSS	Fetal Kidney	kidney
23	chr9:100069200-100070000	Bivalent Enhancer	Stomach Mucosa	stomach
24	chr9:100069200-100070200	Active TSS	Muscle Satellite Cultured Cells	--
25	chr9:100069200-100070200	Flanking Active TSS	Brain Angular Gyrus	brain
26	chr9:100069200-100070200	Bivalent Enhancer	Fetal Brain Male	brain
27	chr9:100069200-100070200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
28	chr9:100069200-100070200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr9:100069200-100070200	Flanking Active TSS	NH-A	brain
30	chr9:100069200-100070400	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr9:100069200-100070400	Flanking Active TSS	Ovary	ovary
32	chr9:100069200-100070400	Enhancers	Pancreas	Pancrea
33	chr9:100069200-100070600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:100069200-100071800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:100069400-100069800	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr9:100069400-100069800	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr9:100069400-100069800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:100069400-100069800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:100069400-100069800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
40	chr9:100069400-100069800	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr9:100069400-100069800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
42	chr9:100069400-100069800	Flanking Active TSS	HSMM	muscle
43	chr9:100069400-100070000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:100069400-100070000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:100069400-100070000	Enhancers	Fetal Heart	heart
46	chr9:100069400-100070000	Active TSS	Psoas Muscle	Psoas
47	chr9:100069400-100070200	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr9:100069400-100070200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:100069400-100070200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:100069400-100070200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links