Variant report

Variant	rs10116686
Chromosome Location	chr9:100044907-100044908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100031832..100033632-chr9:100044301..100046753,2	MCF-7	breast:
2	chr9:99999112..100001027-chr9:100043234..100044992,2	K562	blood:

Variant related genes	Relation type
ENSG00000203279	Chromatin interaction
ENSG00000254876	Chromatin interaction
ENSG00000254483	Chromatin interaction
ENSG00000197816	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10114803	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10115892	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10116963	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118493	0.88[AFR][1000 genomes]
rs10121540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10123199	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435869	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10817266	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10817311	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10817347	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817378	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10981301	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10981371	0.89[AMR][1000 genomes]
rs10981495	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10981569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981661	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10981664	0.85[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10981759	0.84[AFR][1000 genomes]
rs11787986	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238604	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12682916	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290936	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2401383	0.85[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28628235	0.91[AFR][1000 genomes]
rs28669226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28864177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747500	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3747501	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs3747502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4436243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526475	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45498203	0.93[EUR][1000 genomes]
rs4623562	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58100566	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59602329	0.85[AFR][1000 genomes]
rs7024183	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7025132	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7030763	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7042820	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73559817	0.97[EUR][1000 genomes]
rs73654687	0.81[ASN][1000 genomes]
rs7466408	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7469441	0.87[EUR][1000 genomes]
rs7849353	0.86[CHB][hapmap];0.84[JPT][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7851443	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7854563	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7855042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858368	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7864190	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7872384	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100025800-100050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:100036800-100052200	Weak transcription	Stomach Mucosa	stomach
4	chr9:100037200-100050200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:100037400-100047000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr9:100037800-100046600	Strong transcription	Stomach Smooth Muscle	stomach
7	chr9:100038200-100050600	Weak transcription	Esophagus	oesophagus
8	chr9:100038600-100045800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:100038600-100046800	Strong transcription	Brain Anterior Caudate	brain
10	chr9:100038600-100047600	Weak transcription	HepG2	liver
11	chr9:100038800-100046400	Strong transcription	Ovary	ovary
12	chr9:100038800-100047200	Strong transcription	Liver	Liver
13	chr9:100038800-100050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:100039000-100046400	Strong transcription	Fetal Muscle Leg	muscle
15	chr9:100039000-100047000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:100039000-100047000	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:100039000-100050600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:100039000-100052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:100039000-100053000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:100039000-100054200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:100039200-100052800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr9:100039200-100056400	Weak transcription	Small Intestine	intestine
23	chr9:100039400-100046400	Strong transcription	Left Ventricle	heart
24	chr9:100039400-100046600	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:100039400-100046800	Strong transcription	Primary T cells from cord blood	blood
26	chr9:100039600-100046400	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:100039600-100046600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr9:100039600-100047200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:100039600-100047400	Strong transcription	Adipose Nuclei	Adipose
30	chr9:100039600-100055000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr9:100039600-100055600	Weak transcription	NH-A	brain
32	chr9:100039800-100045800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:100039800-100046200	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:100039800-100046800	Strong transcription	Dnd41	blood
35	chr9:100039800-100047200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:100039800-100047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:100039800-100048000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:100039800-100050400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr9:100039800-100051800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:100039800-100055600	Weak transcription	NHLF	lung
41	chr9:100040200-100045200	Weak transcription	HUVEC	blood vessel
42	chr9:100040200-100046800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr9:100040200-100046800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr9:100040400-100046400	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr9:100040600-100047000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:100040800-100055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:100041000-100050400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:100041200-100045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:100041200-100050600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:100041400-100045800	Weak transcription	Fetal Intestine Small	intestine

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