Variant report

Variant	rs7042820
Chromosome Location	chr9:100013493-100013494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10114464	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10114803	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10116686	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10116963	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10121540	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10123199	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10817263	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817266	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817311	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817347	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10817369	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10817378	0.82[ASN][1000 genomes]
rs10981301	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10981371	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981569	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11787986	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12237510	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12682916	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12686392	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290936	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28669226	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28864177	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3747502	0.81[ASN][1000 genomes]
rs3747505	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3747509	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4436243	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4526475	0.82[ASN][1000 genomes]
rs4623562	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58100566	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60714215	0.97[EUR][1000 genomes]
rs7024183	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7025132	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7030763	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73654686	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73654687	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7849353	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7851443	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7854563	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7855042	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7858368	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7864190	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7872384	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972791	chr9:100007482-100037888	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100001200-100017000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:100001200-100039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:100001400-100014000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr9:100001400-100017600	Weak transcription	Left Ventricle	heart
5	chr9:100001400-100017800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:100001600-100014000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:100001600-100022200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:100001600-100037400	Weak transcription	Primary T cells from cord blood	blood
9	chr9:100002000-100015200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:100002000-100016600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:100002000-100016600	Weak transcription	Thymus	Thymus
12	chr9:100002000-100018000	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:100002000-100023000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:100002000-100025400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:100002000-100037400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:100002000-100037800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:100002000-100038600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:100002000-100038600	Weak transcription	Fetal Intestine Large	intestine
19	chr9:100002000-100038600	Weak transcription	Fetal Intestine Small	intestine
20	chr9:100002000-100038800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:100002000-100038800	Weak transcription	Ovary	ovary
22	chr9:100002000-100038800	Weak transcription	Right Ventricle	heart
23	chr9:100002000-100039000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:100002000-100039600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:100002000-100039600	Weak transcription	Adipose Nuclei	Adipose
26	chr9:100002000-100039600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:100002000-100039600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:100002000-100040400	Weak transcription	Spleen	Spleen
29	chr9:100002200-100014600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:100002200-100038800	Weak transcription	Liver	Liver
31	chr9:100002200-100039400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:100002200-100039400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:100002400-100037400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr9:100003200-100017600	Weak transcription	Dnd41	blood
35	chr9:100009200-100015800	Weak transcription	Psoas Muscle	Psoas
36	chr9:100010000-100015800	Weak transcription	Esophagus	oesophagus
37	chr9:100010600-100039400	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:100010800-100018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:100011000-100015000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:100011400-100015200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:100011600-100022400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:100011600-100038800	Weak transcription	Fetal Stomach	stomach
43	chr9:100011600-100039600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:100013000-100040400	Weak transcription	Brain Substantia Nigra	brain

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