Variant report

Variant	rs10817347
Chromosome Location	chr9:100027008-100027009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10114464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10114803	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10116686	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10118493	0.87[AFR][1000 genomes]
rs10121540	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10123199	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817263	0.86[ASN][1000 genomes]
rs10817266	0.86[ASN][1000 genomes]
rs10817311	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10817369	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10817378	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10981301	0.86[ASN][1000 genomes]
rs10981371	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10981569	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10981661	0.88[AFR][1000 genomes]
rs10981664	0.87[AFR][1000 genomes]
rs10981759	0.83[AFR][1000 genomes]
rs11787986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12237510	0.85[ASN][1000 genomes]
rs12238604	0.83[AFR][1000 genomes]
rs12682916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12686392	0.86[ASN][1000 genomes]
rs2290936	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2401383	0.87[AFR][1000 genomes]
rs28628235	0.89[AFR][1000 genomes]
rs28669226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28864177	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3747500	0.90[AFR][1000 genomes]
rs3747501	0.89[AFR][1000 genomes]
rs3747502	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3747505	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3747509	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4436243	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4526475	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs45498203	0.88[EUR][1000 genomes]
rs4623562	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58100566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59602329	0.83[AFR][1000 genomes]
rs60714215	0.84[EUR][1000 genomes]
rs7024183	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7025132	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7030763	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7042820	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73559817	0.92[EUR][1000 genomes]
rs73654686	0.86[ASN][1000 genomes]
rs73654687	0.88[ASN][1000 genomes]
rs7466408	0.89[AFR][1000 genomes]
rs7469441	0.82[EUR][1000 genomes]
rs7849353	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7851443	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7854563	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7855042	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7858368	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7864190	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7872384	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972791	chr9:100007482-100037888	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100001200-100039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100001600-100037400	Weak transcription	Primary T cells from cord blood	blood
3	chr9:100002000-100037400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:100002000-100037800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:100002000-100038600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:100002000-100038600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:100002000-100038600	Weak transcription	Fetal Intestine Small	intestine
8	chr9:100002000-100038800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:100002000-100038800	Weak transcription	Ovary	ovary
10	chr9:100002000-100038800	Weak transcription	Right Ventricle	heart
11	chr9:100002000-100039000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:100002000-100039600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:100002000-100039600	Weak transcription	Adipose Nuclei	Adipose
14	chr9:100002000-100039600	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:100002000-100039600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:100002000-100040400	Weak transcription	Spleen	Spleen
17	chr9:100002200-100038800	Weak transcription	Liver	Liver
18	chr9:100002200-100039400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:100002200-100039400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:100002400-100037400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:100010600-100039400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:100011600-100038800	Weak transcription	Fetal Stomach	stomach
23	chr9:100011600-100039600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:100013000-100040400	Weak transcription	Brain Substantia Nigra	brain
25	chr9:100022600-100039000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:100023400-100039600	Weak transcription	Fetal Lung	lung
27	chr9:100023600-100032800	Weak transcription	K562	blood
28	chr9:100024400-100040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:100024400-100042600	Weak transcription	Fetal Heart	heart
30	chr9:100025000-100039400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:100025800-100038600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:100025800-100050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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