Variant report

Variant	rs11003456
Chromosome Location	chr10:54969541-54969542
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10824936	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10824937	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10824947	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10824949	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10824952	0.91[ASN][1000 genomes]
rs11003448	0.99[ASN][1000 genomes]
rs11003452	0.99[ASN][1000 genomes]
rs11003457	0.99[ASN][1000 genomes]
rs11003459	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11003469	0.95[ASN][1000 genomes]
rs11003470	0.95[ASN][1000 genomes]
rs11003475	0.91[ASN][1000 genomes]
rs12763554	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16937295	0.91[ASN][1000 genomes]
rs1903948	0.91[ASN][1000 genomes]
rs1904055	0.99[ASN][1000 genomes]
rs1947757	0.99[ASN][1000 genomes]
rs1993855	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993856	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384161	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384162	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384163	0.99[ASN][1000 genomes]
rs2384164	0.99[ASN][1000 genomes]
rs2891440	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4427482	0.95[ASN][1000 genomes]
rs4935063	0.99[ASN][1000 genomes]
rs4935064	0.99[ASN][1000 genomes]
rs4935068	0.91[ASN][1000 genomes]
rs4935400	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935405	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7893316	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54966000-54969600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:54966400-54981600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:54968600-54970800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:54968800-54970000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:54968800-54970200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:54968800-54970600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:54969400-54970400	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links