Variant report

Variant	rs11003469
Chromosome Location	chr10:54984659-54984660
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10508992	0.85[EUR][1000 genomes]
rs10824936	0.90[ASN][1000 genomes]
rs10824937	0.92[ASN][1000 genomes]
rs10824947	0.95[ASN][1000 genomes]
rs10824949	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10824952	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10824954	0.85[EUR][1000 genomes]
rs10824955	0.85[EUR][1000 genomes]
rs10824957	0.85[EUR][1000 genomes]
rs10824958	0.85[EUR][1000 genomes]
rs10824959	0.85[EUR][1000 genomes]
rs10824966	0.85[EUR][1000 genomes]
rs10824967	0.85[EUR][1000 genomes]
rs10824968	0.84[EUR][1000 genomes]
rs10824969	0.84[EUR][1000 genomes]
rs10824972	0.84[EUR][1000 genomes]
rs11003448	0.96[ASN][1000 genomes]
rs11003452	0.96[ASN][1000 genomes]
rs11003456	0.95[ASN][1000 genomes]
rs11003457	0.96[ASN][1000 genomes]
rs11003459	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11003470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003475	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003481	0.84[EUR][1000 genomes]
rs11003485	0.85[EUR][1000 genomes]
rs11003490	0.84[EUR][1000 genomes]
rs11003491	0.85[EUR][1000 genomes]
rs11003492	0.85[EUR][1000 genomes]
rs11003496	0.84[EUR][1000 genomes]
rs11003500	0.83[EUR][1000 genomes]
rs12220148	0.85[EUR][1000 genomes]
rs12571947	0.84[EUR][1000 genomes]
rs12572208	0.84[EUR][1000 genomes]
rs12572462	0.84[EUR][1000 genomes]
rs12573223	0.84[EUR][1000 genomes]
rs12763554	0.92[ASN][1000 genomes]
rs16937295	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1871071	0.85[EUR][1000 genomes]
rs1903948	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1903963	0.85[EUR][1000 genomes]
rs1904055	0.96[ASN][1000 genomes]
rs1947757	0.96[ASN][1000 genomes]
rs1993855	0.95[ASN][1000 genomes]
rs1993856	0.95[ASN][1000 genomes]
rs2384161	0.95[ASN][1000 genomes]
rs2384162	0.95[ASN][1000 genomes]
rs2384163	0.96[ASN][1000 genomes]
rs2384164	0.96[ASN][1000 genomes]
rs2384195	0.85[EUR][1000 genomes]
rs2891440	0.90[ASN][1000 genomes]
rs2891448	0.85[EUR][1000 genomes]
rs4427482	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611109	0.85[EUR][1000 genomes]
rs4935063	0.96[ASN][1000 genomes]
rs4935064	0.96[ASN][1000 genomes]
rs4935068	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4935400	0.92[ASN][1000 genomes]
rs4935405	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4935408	0.85[EUR][1000 genomes]
rs4935409	0.85[EUR][1000 genomes]
rs7893316	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7893466	0.85[EUR][1000 genomes]
rs9633602	0.85[EUR][1000 genomes]
rs9633603	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54983200-54984800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:54983400-54984800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:54983400-54985600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:54983400-54985600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:54983600-54985600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:54984200-54985200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:54984200-54985200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:54984200-54985400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:54984400-54985600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:54984600-54984800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:54984600-54984800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:54984600-54985200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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