Variant report

Variant	rs11003470
Chromosome Location	chr10:54986447-54986448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10508992	0.86[EUR][1000 genomes]
rs10824936	0.90[ASN][1000 genomes]
rs10824937	0.92[ASN][1000 genomes]
rs10824947	0.95[ASN][1000 genomes]
rs10824949	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10824952	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10824954	0.86[EUR][1000 genomes]
rs10824955	0.85[EUR][1000 genomes]
rs10824957	0.87[EUR][1000 genomes]
rs10824958	0.87[EUR][1000 genomes]
rs10824959	0.87[EUR][1000 genomes]
rs10824966	0.86[EUR][1000 genomes]
rs10824967	0.86[EUR][1000 genomes]
rs10824968	0.85[EUR][1000 genomes]
rs10824969	0.85[EUR][1000 genomes]
rs10824972	0.85[EUR][1000 genomes]
rs11003448	0.96[ASN][1000 genomes]
rs11003452	0.96[ASN][1000 genomes]
rs11003456	0.95[ASN][1000 genomes]
rs11003457	0.96[ASN][1000 genomes]
rs11003459	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11003469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003475	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003481	0.85[EUR][1000 genomes]
rs11003485	0.87[EUR][1000 genomes]
rs11003490	0.85[EUR][1000 genomes]
rs11003491	0.87[EUR][1000 genomes]
rs11003492	0.87[EUR][1000 genomes]
rs11003496	0.85[EUR][1000 genomes]
rs11003500	0.83[EUR][1000 genomes]
rs11003556	0.94[CEU][hapmap]
rs11003558	0.94[CEU][hapmap]
rs12220148	0.87[EUR][1000 genomes]
rs12571947	0.85[EUR][1000 genomes]
rs12572208	0.85[EUR][1000 genomes]
rs12572462	0.85[EUR][1000 genomes]
rs12573223	0.85[EUR][1000 genomes]
rs12763554	0.92[ASN][1000 genomes]
rs16937295	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1871071	0.86[EUR][1000 genomes]
rs1903948	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1903963	0.87[EUR][1000 genomes]
rs1904055	0.96[ASN][1000 genomes]
rs1947757	0.96[ASN][1000 genomes]
rs1993855	0.95[ASN][1000 genomes]
rs1993856	0.95[ASN][1000 genomes]
rs2384161	0.95[ASN][1000 genomes]
rs2384162	0.95[ASN][1000 genomes]
rs2384163	0.96[ASN][1000 genomes]
rs2384164	0.96[ASN][1000 genomes]
rs2384195	0.86[EUR][1000 genomes]
rs2891440	0.90[ASN][1000 genomes]
rs2891448	0.87[EUR][1000 genomes]
rs2891449	0.95[CEU][hapmap]
rs4427482	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611109	0.86[EUR][1000 genomes]
rs4935063	0.96[ASN][1000 genomes]
rs4935064	0.96[ASN][1000 genomes]
rs4935068	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4935400	0.92[ASN][1000 genomes]
rs4935405	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4935408	0.87[EUR][1000 genomes]
rs4935409	0.87[EUR][1000 genomes]
rs7893316	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7893466	0.86[EUR][1000 genomes]
rs9633602	0.86[EUR][1000 genomes]
rs9633603	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54985200-55005200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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