Variant report

Variant	rs4427482
Chromosome Location	chr10:54983685-54983686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10824936	0.90[ASN][1000 genomes]
rs10824937	0.92[ASN][1000 genomes]
rs10824947	0.95[ASN][1000 genomes]
rs10824949	0.96[ASN][1000 genomes]
rs10824952	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003448	0.96[ASN][1000 genomes]
rs11003452	0.96[ASN][1000 genomes]
rs11003456	0.95[ASN][1000 genomes]
rs11003457	0.96[ASN][1000 genomes]
rs11003459	0.96[ASN][1000 genomes]
rs11003469	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003470	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003475	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11003556	0.89[CEU][hapmap]
rs11003558	0.85[CEU][hapmap]
rs12763554	0.92[ASN][1000 genomes]
rs16937295	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1903948	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1904055	0.96[ASN][1000 genomes]
rs1947757	0.96[ASN][1000 genomes]
rs1993855	0.95[ASN][1000 genomes]
rs1993856	0.95[ASN][1000 genomes]
rs2384161	0.95[ASN][1000 genomes]
rs2384162	0.95[ASN][1000 genomes]
rs2384163	0.96[ASN][1000 genomes]
rs2384164	0.96[ASN][1000 genomes]
rs2891440	0.90[ASN][1000 genomes]
rs2891449	0.90[CEU][hapmap]
rs4935063	0.96[ASN][1000 genomes]
rs4935064	0.96[ASN][1000 genomes]
rs4935068	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4935400	0.92[ASN][1000 genomes]
rs4935405	0.95[ASN][1000 genomes]
rs7893316	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54982000-54984000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:54983200-54984200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:54983200-54984400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:54983200-54984600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:54983200-54984600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:54983200-54984800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:54983400-54984000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:54983400-54984200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:54983400-54984800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:54983400-54985600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:54983400-54985600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:54983600-54984000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr10:54983600-54984200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:54983600-54984200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:54983600-54984200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:54983600-54984200	Enhancers	Fetal Lung	lung
17	chr10:54983600-54985600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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