Variant report

Variant	rs11006600
Chromosome Location	chr10:61366671-61366672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10509110	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10826317	0.96[ASN][1000 genomes]
rs10826323	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11006595	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11006597	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11006609	0.91[ASN][1000 genomes]
rs11598299	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11815662	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11819306	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11819752	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12415404	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416613	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913818	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16913821	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16913829	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909635	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2393559	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35710625	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55957619	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56083792	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7918255	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7918394	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7919042	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7921200	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7922399	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437684	chr10:61354446-61367720	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1049492	chr10:61357609-61368880	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv999013	chr10:61361573-61366692	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3318118	chr10:61362046-61366944	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1814710	chr10:61362321-61367131	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3486703	chr10:61364453-61366745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3325439	chr10:61364571-61367119	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3398107	chr10:61364771-61366819	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61355600-61366800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:61362000-61368600	Weak transcription	Placenta	Placenta
3	chr10:61366000-61367000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:61366000-61367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:61366000-61367400	Enhancers	Brain Germinal Matrix	brain
6	chr10:61366200-61366800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:61366200-61366800	Enhancers	Fetal Heart	heart
8	chr10:61366200-61367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:61366200-61367000	Enhancers	Hela-S3	cervix
10	chr10:61366200-61369000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:61366400-61366800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr10:61366400-61368400	Enhancers	Fetal Intestine Large	intestine
13	chr10:61366600-61367200	Weak transcription	Fetal Brain Male	brain
14	chr10:61366600-61367200	Weak transcription	Fetal Intestine Small	intestine

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